Faculty of Science has won 1994 Science and Technology Award from Thailand Toray Science Foundation (TTSF)

Department of Biochemistry, Faculty of Science has won 2010 Science and Technology Award from Thailand Toray Science Foundation (TTSF)

Department of Biotechnology, Faculty of Science has won 2017 Science and Technology Award from Thailand Toray Science Foundation (TTSF)

Faculty of Science has won a Medal of Honor for the Best of Tree City (Prusa Nakara) Year 2002-2003 and 2008 from Ratchathewi District Office, Bangkok Metropolitan Administration

Faculty of Science has won 13 "Outstanding Scientist Awards of Thailand" from the Foundation for the Promotion of Science and Technology under the Patronage of His Majesty the King

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Faculty of Science, Mahidol University has won the Best Research Quality Awards from Thailand Research Fund (TRF)

Year 2008 Faculty of Science has won in 5 disciplines :
1. Preclinics
2. Chemistry
3. Biotechnology
4. Biology
5. Physics

Year 2011 Faculty of Science has won in 3 disciplines :
1. Biotechnology
2. Physics
3. Preclinics

Year 2014 Faculty of Science has won in 5 disciplines :
1. Biotechnology
2. Biology
3. Chemistry
4. Biochemistry
5. Preclinics

Year 2017 Faculty of Science has won in 10 disciplines :
1. Biotechnology
2. Materials Science and Engineering
3. Multi Disciplinary Program
4. Biology
5. Chemistry
6. Physics
7. Mathematics
8. Biochemistry
9. Microbiology
10. Preclinics